The mode “include Juce Source Code Directly (split across several files)” is nice, but it should also use “juce.h” as jucer Header instead of the juce_amalgamated.h.
Also the there should be an option to use “juce.h” as header in audio plugins\wrapper\juce_PluginHeaders.h
Another feature i would like to see, if the new jucer automatically adds a filter to the (Visual Studio/Xcode) project which contains all juce files.